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Co-operative College, Mandalay
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Dagon University
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Kyaukse University
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Laquarware Technological college
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Mandalay Technological University
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Mandalay University of Distance Education
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Mandalay University of Foreign Languages
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Maubin University
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Mawlamyine University
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Meiktila University
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Mohnyin University
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Myanmar Institute of Information Technology
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Myanmar Maritime University
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National Management Degree College
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Naypyitaw State Academy
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Pathein University
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Sagaing University
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Sagaing University of Education
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Taunggyi University
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Technological University, Hmawbi
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Technological University (Kyaukse)
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Technological University Mandalay
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University of Computer Studies, Mandalay
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University of Computer Studies Maubin
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University of Computer Studies, Meikhtila
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University of Computer Studies Pathein
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University of Computer Studies, Taungoo
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University of Computer Studies, Yangon
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University of Dental Medicine Mandalay
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University of Dental Medicine, Yangon
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University of Information Technology
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University of Mandalay
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University of Medicine 1
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University of Medicine 2
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University of Medicine Mandalay
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University of Myitkyina
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University of Public Health, Yangon
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University of Veterinary Science
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University of Yangon
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West Yangon University
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Yadanabon University
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Yangon Technological University
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Yangon University of Distance Education
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Yangon University of Economics
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Yangon University of Education
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Yangon University of Foreign Languages
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Yezin Agricultural University
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New Index
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Item
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Data Compression Strategy for Reference-Free Sequencing FASTQ Data
http://hdl.handle.net/20.500.12678/0000006268
http://hdl.handle.net/20.500.12678/0000006268cd7aefe7-439b-4971-9644-44487d23309c
ceacec72-8ae3-4135-9385-9a08603cc75f
Name / File | License | Actions |
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![]() |
© 2017 ICAIT
|
Publication type | ||||||
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Conference paper | ||||||
Upload type | ||||||
Publication | ||||||
Title | ||||||
Title | Data Compression Strategy for Reference-Free Sequencing FASTQ Data | |||||
Language | en | |||||
Publication date | 2017-11-02 | |||||
Authors | ||||||
Hsu Mon Lei Aung | ||||||
Swe Zin Hlaing | ||||||
Description | ||||||
Today, Next Generation Sequencing (NGS) technologies play a vital role for many research fields such as medicine, microbiology and agriculture, etc. The huge amount of these genomic sequencing data produced is growing exponentially. These data storages, processing and transmission becomes the most important challenges. Data compression seems to be a suitable solution to overcome these challenges. This paper proposes a lossless data compression strategy to process reference-free raw sequencing data in FASTQ format. The proposed system splits the input file into block files and creates a dynamic dictionary for reads. Afterwards, the transformed read sequences and dictionary are compressed by using appropriate lossless compression method. The performance of the proposed system was compared with existing state-of-art compression algorithms for three sample data sets. The proposed system provides up to 3% compression ratio of other compression algorithms. | ||||||
Keywords | ||||||
Genomic Sequencing data, lossless compression, reference-free sequence, reference-based sequence | ||||||
Conference papers | ||||||
ICAIT-2017 | ||||||
1-2 November, 2017 | ||||||
1st International Conference on Advanced Information Technologies | ||||||
Yangon, Myanmar | ||||||
Data Science | ||||||
https://www.uit.edu.mm/icait-2017/ |