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  1. University of Yangon
  2. Department of Zoology

DNA Barcoding of Stone Fish Uranoscopus Oligolepis: Intra Species Delineation and Hypothetical Protein Analysis

http://hdl.handle.net/20.500.12678/0000001739
http://hdl.handle.net/20.500.12678/0000001739
e143ac4f-fbd3-42b4-aefb-4d737b71ca89
fd6c2084-15e4-449e-b26b-0f8a7433108c
None
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Dr.Haq Dr.Haq paper - DNA Barcoding of Stone Fish Uranoscopus Oligolepis Intra Species.pdf (777 Kb)
Publication type
Journal article
Upload type
Publication
Title
Title DNA Barcoding of Stone Fish Uranoscopus Oligolepis: Intra Species Delineation and Hypothetical Protein Analysis
Language en
Publication date 2017
Authors
Tiwary, Chandan
Haq, M.A. Badhul
Vaitheeswari1, S.
Kalaiselvi1, M.
Sikder, Mohammad Nurul Azim
Wah Wah Min
Description
The present study addresses this issue by examining the patterning of Cytochrome Oxidase I diversity in the stone fish Uranoscopus oligolepis the structurally diverse group of Family Uranoscopidae. The sequences were analyzed for their species identification using BOLD’s identification engine. The COI sequences of U. oligolepis from different geographical regions were extracted from NCBI for intra species variation analysis. All sequences were aligned using Clustal W. The sequences were trimmed using software and phylogenetic tree was constructed with bootstrap test. The results showed that the cytosine content was high (31%). The least molar concentration was observed in guanine (19.5%) and Adenine (19.6%). Thymine was the second predominant in molar concentration next to thymine which is followed by adenine. The G+C content was found to be 49.6% and A+T content was 50.4%. Leucine and Alanine content was high in the amino acid composition. From the study it is assumed that the mitochondrial gene COI can be the potential barcoding region to identify an organism up to the species level.
Keywords
COI
Identifier https://uyr.uy.edu.mm/handle/123456789/489
Journal articles
8
Invention Journal of Research Technology in Engineering & Management (IJRTEM)
1
Conference papaers
Books/reports/chapters
Thesis/dissertations
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